- Introduction to HPC clusters
- UNIX Introduction
- HPC Class
- Condo 2017
- File Transfers
- Cloud Back-up with Rclone
- Globus Connect
- Sample Job Scripts
- Using DDT Parallel Debugger, MAP profiler and Performance Reports
- Using Matlab Parallel Server
- Using ANSYS RSM
- Nova OnDemand
- Using Julia
- LAS Machine Learning Container
- Support & Contacts
- Systems & Equipment
- FAQ: Frequently Asked Questions
- Contact Us
- Cluster Access Request
Unix Tutorial 2
UNIX Tutorial Two
2.1 Copying Files
cp file1 file2 is the command which makes a copy of file1 in the current working directory and calls it file2
What we are going to do now, is to take a file stored in an open access area of the file system, and use the cp command to copy it to your unixstuff directory.
First, cd to your unixstuff directory.
% cd ~/unixstuff
Then at the UNIX prompt, type,
% cp /home/SAMPLES/science.txt .
The above command means copy the file science.txt to the current directory, keeping the name the same.
Create a backup of your science.txt file by copying it to a file called science.bak
2.2 Moving files
mv file1 file2 moves (or renames) file1 to file2
To move a file from one place to another, use the mv command. This has the effect of moving rather than copying the file, so you end up with only one file rather than two.
It can also be used to rename a file, by moving the file to the same directory, but giving it a different name.
We are now going to move the file science.bak to your backup directory.
First, change directories to your unixstuff directory (can you remember how?). Then, inside the unixstuff directory, type
% mv science.bak backups/.
Type ls and ls backups to see if it has worked.
2.3 Removing files and directories
rm (remove), rmdir (remove directory)
To delete (remove) a file, use the rm command. As an example, we are going to create a copy of the science.txt file then delete it.
Inside your unixstuff directory, type
% cp science.txt tempfile.txt
% rm tempfile.txt
You can use the rmdir command to remove a directory (make sure it is empty first). Try to remove the backups directory. You will not be able to since UNIX will not let you remove a non-empty directory.
Create a directory called tempstuff using mkdir , then remove it using the rmdir command.
2.4 Displaying the contents of a file on the screen
clear (clear screen)
Before you start the next section, you may like to clear the terminal window of the previous commands so the output of the following commands can be clearly understood.
At the prompt, type
This will clear all text and leave you with the % prompt at the top of the window.
The command cat can be used to display the contents of a file on the screen. Type:
% cat science.txt
As you can see, the file is longer than than the size of the window, so it scrolls past making it unreadable.
The command less writes the contents of a file onto the screen a page at a time. Type
% less science.txt
Press the [space-bar] if you want to see another page, and type [q] if you want to quit reading. As you can see, less is used in preference to cat for long files.
The head command writes the first ten lines of a file to the screen.
First clear the screen then type
% head science.txt
% head -5 science.txt
What difference did the -5 do to the head command?
The tail command writes the last ten lines of a file to the screen.
Clear the screen and type
% tail science.txt
Q. How can you view the last 15 lines of the file?
2.5 Searching the contents of a file
Simple searching using less
Using less, you can search though a text file for a keyword (pattern). For example, to search through science.txt for the word'science', type
% less science.txt
then, still in less, type a forward slash [/] followed by the word to search
As you can see, less finds and highlights the keyword. Type [n] to search for the next occurrence of the word.
grep (don't ask why it is called grep)
grep is one of many standard UNIX utilities. It searches files for specified words or patterns. First clear the screen, then type
% grep science science.txt
As you can see, grep has printed out each line containg the word science.
Or has it ????
% grep Science science.txt
The grep command is case sensitive; it distinguishes between Science and science.
To ignore upper/lower case distinctions, use the -i option, i.e. type
% grep -i science science.txt
To search for a phrase or pattern, you must enclose it in single quotes (the apostrophe symbol). For example to search for spinning top, type
% grep -i 'spinning top' science.txt
Some of the other options of grep are:
-v display those lines that do NOT match
-n precede each matching line with the line number
-c print only the total count of matched lines
Try some of them and see the different results. Don't forget, you can use more than one option at a time. For example, the number of lines without the words science or Science is
% grep -ivc science science.txt
wc (word count)
A handy little utility is the wc command, short for word count. To do a word count on science.txt, type
% wc -w science.txt
To find out how many lines the file has, type
% wc -l science.txt
|cp file1 file2||copy file1 and call it file2|
|mv file1 file2||move or rename file1 to file2|
|rm file||remove a file|
|rmdir directory||remove a directory|
|cat file||display a file|
|less file||display a file a page at a time|
|head file||display the first few lines of a file|
|tail file||display the last few lines of a file|
|grep 'keyword' file||search a file for keywords|
|wc file||count number of lines/words/characters in file|
M.Stonebank@surrey.ac.uk, © 9th October 2000